M. lignano Single Cells
Mlig455
transcriptome Search Clusters Lineages Gates Plates Cells Vs. Smed Download

MligTC455_42797 (TRIM56)

Mlig455 TC Mlig455 genes Homologs Pfam Full annotation
MligTC455_42797 Mlig455_005346
Mlig455_005462		 TRIM56; Trim2; mei-P26 B-box zinc finger Mlig455_005346:
{Pfam: B-box zinc finger [PF00643.26, score=42.9]; RING-type zinc-finger [PF13445.8, score=35.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=29.2]; Ring finger domain [PF13639.8, score=23.8]; zinc-RING finger domain [PF14634.8, score=23.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.1]}
{Human: ENSG00000169871, TRIM56, tripartite motif containing 56, [RH, Score=128, Expect=2e-30]; ENSG00000109654, TRIM2, tripartite motif containing 2, [RH, Score=125, Expect=5e-30]}
{Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=129, Expect=6e-31]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=124, Expect=3e-29]}
{Dmel: FBgn0026206, mei-P26, meiotic P26, [Score=103, Expect=1e-22]}
{Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [RH, Score=405, Expect=3e-135]}

Mlig455_005462:
{Pfam: B-box zinc finger [PF00643.26, score=42.8]; RING-type zinc-finger [PF13445.8, score=35.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=29.2]; Ring finger domain [PF13639.8, score=23.8]; zinc-RING finger domain [PF14634.8, score=23.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.0]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=22.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.1]}
{Human: ENSG00000169871, TRIM56, tripartite motif containing 56, [RH, Score=128, Expect=2e-30]; ENSG00000109654, TRIM2, tripartite motif containing 2, [RH, Score=125, Expect=7e-30]}
{Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=128, Expect=1e-30]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=123, Expect=4e-29]}
{Dmel: FBgn0026206, mei-P26, meiotic P26, [Score=103, Expect=1e-22]}
{Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [RH, Score=405, Expect=5e-135]}

Links: Tomoseq.

Expression, Z-scaled

Variance, Z-scaled

Clusters

Expression, raw

Similar genes by expression

Nr. Mlig455 TC Pearson corr. Mlig455 genes Homologs Pfam Full annotation
1. MligTC455_48420 0.425 Mlig455_045240
Mlig455_069159		 Details
2. MligTC455_42572 0.38 Mlig455_036473 Details
3. MligTC455_17761 0.366 Mlig455_016874 GDF6; Gdf6; dpp Transforming growth factor beta like domain Details
4. MligTC455_17760 0.365 Mlig455_016871 GDF6; Gdf6; dpp Transforming growth factor beta like domain Details
5. MligTC455_42573 0.357 Mlig455_056258 Details
6. MligTC455_17040 0.356 Mlig455_029809 ARHGAP39; Arhgap39; RhoGAP93B MyTH4 domain Details
7. MligTC455_44313 0.345 Mlig455_004707 MYL4; Mlc1; Myl6b EF-hand domain Details
8. MligTC455_20859 0.344 Mlig455_011992 MYL12B; Myl12b; sqh EF-hand domain pair Details
9. MligTC455_20860 0.343 Mlig455_012001 AC154187.2; MYL12B; sqh EF-hand domain pair Details
10. MligTC455_43950 0.343 Mlig455_029261
Mlig455_035647
Mlig455_035748		 Details
11. MligTC455_17824 0.333 Mlig455_056869 Reverse transcriptase (RNA-dependent DNA polymerase) Details
12. MligTC455_29960 0.326 Mlig455_023336 ANGPTL2; Angptl2; CG8642 Fibrinogen beta and gamma chains, C-terminal globular domain Details
13. MligTC455_34281 0.324 Mlig455_058179 CSRP2; Csrp2; Mlp84B LIM domain Details
14. MligTC455_29301 0.322 Mlig455_063822 MYH6; Mhc; Myh6 Myosin head (motor domain) Details
15. MligTC455_50015 0.317 Mlig455_019671 Details
16. MligTC455_44312 0.315 Mlig455_004600 MYL6B; Mlc1; Myl6b EF-hand domain Details
17. MligTC455_45111 0.315 Mlig455_014293 PXN; Pax; Pxn LIM domain Details
18. MligTC455_29351 0.313 Mlig455_066669 Details
19. MligTC455_45271 0.307 Mlig455_064813 TNNT2; Tnnt3; up Troponin Details
20. MligTC455_46393 0.305 Mlig455_065811 CNN3; Cnn3; Mp20 Calponin homology (CH) domain Details
21. MligTC455_45270 0.303 Mlig455_034550 TNNT3; Tnnt3; up Troponin Details

Similar genes by variation

Nr. Mlig455 TC Pearson corr. Mlig455 genes Homologs Pfam Full annotation
Berezikov Lab - 2021 © ERIBA