M. lignano Single Cells
Mlig455
transcriptome Search Clusters Lineages Gates Plates Cells Vs. Smed Download

MligTC455_06046 (GRIA1)

Mlig455 TC Mlig455 genes Homologs Pfam Full annotation
MligTC455_06046 Mlig455_059298
Mlig455_059299
Mlig455_059312
Mlig455_065190		 GRIA1; GRIA2; GluRIA; GluRIB; Gria1; Gria2 Ligand-gated ion channel;
Ligated ion channel L-glutamate- and glycine-binding site		 Mlig455_059298:
{Pfam: Ligand-gated ion channel [PF00060.28, score=50.8]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=26.8]}
{Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=213, Expect=2e-62]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=211, Expect=2e-61]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=211, Expect=1e-61]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=209, Expect=6e-61]}
{Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=213, Expect=2e-62]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=211, Expect=9e-62]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=211, Expect=5e-62]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=209, Expect=6e-61]}
{Dmel: FBgn0264000, GluRIB, Glutamate receptor IB, [Score=181, Expect=4e-51]}
{Celegans: WBGene00001612, glr-1, Glutamate receptor 1, [Score=182, Expect=8e-52]}
{Smed: dd_Smed_v6_19602_0_1, dd_Smed_v6_19602_0_1, [Score=250, Expect=2e-76]}

Mlig455_059299:
{Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=135.5]; Receptor family ligand binding region [PF01094.30, score=108.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=53.8]; Ligand-gated ion channel [PF00060.28, score=43.8]}
{Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=298, Expect=1e-89]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=288, Expect=3e-86]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=286, Expect=3e-85]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=285, Expect=1e-84]}
{Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=298, Expect=1e-89]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=288, Expect=1e-86]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=286, Expect=2e-85]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=284, Expect=2e-85]}
{Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [Score=300, Expect=4e-90]}
{Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=212, Expect=2e-58]}
{Smed: dd_Smed_v6_19602_0_1, dd_Smed_v6_19602_0_1, [Score=358, Expect=3e-112]}

Mlig455_059312:
{Pfam: Ligand-gated ion channel [PF00060.28, score=144.0]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=135.2]; Receptor family ligand binding region [PF01094.30, score=125.0]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=81.5]}
{Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=543, Expect=3e-178]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=533, Expect=7e-175]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=531, Expect=6e-174]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=528, Expect=9e-173]}
{Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=542, Expect=4e-178]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=533, Expect=8e-175]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=531, Expect=4e-174]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=528, Expect=5e-173]}
{Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [RH, Score=496, Expect=9e-160]}
{Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [RH, Score=420, Expect=4e-131]}
{Smed: dd_Smed_v6_19602_0_1, dd_Smed_v6_19602_0_1, [RH, Score=649, Expect=0.0]}

Mlig455_065190:
{Pfam: Ligand-gated ion channel [PF00060.28, score=145.4]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=134.5]; Receptor family ligand binding region [PF01094.30, score=123.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=81.1]}
{Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=540, Expect=2e-177]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=530, Expect=7e-174]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=529, Expect=4e-173]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=526, Expect=7e-172]}
{Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=539, Expect=4e-177]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=530, Expect=7e-174]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=529, Expect=2e-173]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=525, Expect=6e-172]}
{Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [RH, Score=500, Expect=4e-161]}
{Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [RH, Score=417, Expect=4e-130]}
{Smed: dd_Smed_v6_17901_0_1, dd_Smed_v6_17901_0_1, [RH, Score=634, Expect=0.0]}

Links: Tomoseq.

Expression, Z-scaled

Variance, Z-scaled

Clusters

Expression, raw

Similar genes by expression

Nr. Mlig455 TC Pearson corr. Mlig455 genes Homologs Pfam Full annotation
1. MligTC455_56360 0.854 Mlig455_047338 Details
2. MligTC455_31430 0.53 Mlig455_037801 ZMYM1 Domain of unknown function (DUF4371) Details
3. MligTC455_09171 0.493 Mlig455_007407 Immunoglobulin domain Details
4. MligTC455_09508 0.493 Mlig455_013771 Details
5. MligTC455_06239 0.493 Mlig455_021063 Details
6. MligTC455_08197 0.426 Mlig455_025660 SAM dependent carboxyl methyltransferase Details
7. MligTC455_17988 0.401 Mlig455_064163 CG8916; GABRA4; Gabra4 Neurotransmitter-gated ion-channel ligand binding domain Details
8. MligTC455_26993 0.382 Mlig455_056312 ZMYM1; Zmym1 hAT family C-terminal dimerisation region Details
9. MligTC455_02692 0.381 Mlig455_025512 NPFFR2; Npffr2; SIFaR 7 transmembrane receptor (rhodopsin family) Details
10. MligTC455_55430 0.381 Mlig455_064215 CG8916; GABRA6; Gabra6 Neurotransmitter-gated ion-channel ligand binding domain Details
11. MligTC455_16361 0.367 Mlig455_030357 AMDHD2; Amdhd2; CG17065 DEAD/DEAH box helicase Details
12. MligTC455_02226 0.367 Mlig455_037612 Details
13. MligTC455_54341 0.367 Mlig455_038113 Details
14. MligTC455_31414 0.359 Mlig455_068396 Protein of unknown function (DUF1104) Details
15. MligTC455_09168 0.348 Mlig455_066421 Details
16. MligTC455_17755 0.334 Mlig455_039541 Details
17. MligTC455_04164 0.322 Mlig455_007521 Immunoglobulin domain Details

Similar genes by variation

Nr. Mlig455 TC Pearson corr. Mlig455 genes Homologs Pfam Full annotation
Berezikov Lab - 2021 © ERIBA